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A Holistic Approach to Marine Eco-Systems Biology ArchiMer
Karsenti, Eric; Acinas, Silvia G.; Bork, Peer; Bowler, Chris; De Vargas, Colomban; Raes, Jeroen; Sullivan, Matthew; Arendt, Detlev; Benzoni, Francesca; Claverie, Jean-michel; Follows, Mick; Gorsky, Gaby; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Kandels-lewis, Stefanie; Krzic, Uros; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Reynaud, Emmanuel Georges; Sardet, Christian; Sieracki, Michael E.; Speich, Sabrina; Velayoudon, Didier; Weissenbach, Jean; Wincker, Patrick.
Tipo: Text
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00051/16224/13748.pdf
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DNA barcoding reveals the coral "laboratory-rat'', Stylophora pistillata encompasses multiple identities ArchiMer
Keshavmurthy, Shashank; Yang, Sung-yin; Alamaru, Ada; Chuang, Yao-yang; Pichon, Michel; Obura, David; Fontana, Silvia; De Palmas, Stephane; Stefani, Fabrizio; Benzoni, Francesca; Macdonald, Angus; Noreen, Annika M. E.; Chen, Chienshum; Wallace, Carden C.; Pillay, Ruby Moothein; Denis, Vianney; Amri, Affendi Yang; Reimer, James D.; Mezaki, Takuma; Sheppard, Charles; Loya, Yossi; Abelson, Avidor; Mohammed, Mohammed Suleiman; Baker, Andrew C.; Mostafavi, Pargol Ghavam; Suharsono, Budiyanto A.; Chen, Chaolun Allen.
Stylophora pistillata is a widely used coral "lab-rat'' species with highly variable morphology and a broad biogeographic range (Red Sea to western central Pacific). Here we show, by analysing Cytochorme Oxidase I sequences, from 241 samples across this range, that this taxon in fact comprises four deeply divergent clades corresponding to the Pacific-Western Australia, Chagos-Madagascar-South Africa, Gulf of Aden-Zanzibar-Madagascar, and Red Sea-Persian/Arabian Gulf-Kenya. On the basis of the fossil record of Stylophora, these four clades diverged from one another 51.5-29.6 Mya, i.e., long before the closure of the Tethyan connection between the tropical Indo-West Pacific and Atlantic in the early Miocene (16-24 Mya) and should be recognised as four...
Tipo: Text
Ano: 2013 URL: https://archimer.ifremer.fr/doc/00217/32845/31291.pdf
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Echinophyllia tarae sp n. (Cnidaria, Anthozoa, Scleractinia), a new reef coral species from the Gambier Islands, French Polynesia ArchiMer
Benzoni, Francesca.
A new shallow water scleractinian coral species, Echinophyllia tarae sp. n., is described from the Gambier Islands, French Polynesia. It is characterized by an encrusting corallum, a few large and highly variable corallites with protruding walls, and distinctive costosepta. This coral was observed in muddy environments where several colonies showed partial mortality and re-growth. The new species has morphological affinities with both E. echinata and with Echinomorpha nishihirai, from which it can be distinguished on the basis of the diameter and the protrusion of the largest corallite, the thickness of the septa, and the development of the size of the crown of paliform lobes.
Tipo: Text Palavras-chave: Lobophylliidae; Echinophyllia echinata; Echinomorpha nishihirai; Tara Oceans Expedition.
Ano: 2013 URL: https://archimer.ifremer.fr/doc/00298/40913/39969.pdf
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Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships ArchiMer
Terraneo, Tullia I.; Berumen, Michael L.; Arrigoni, Roberto; Waheed, Zarinah; Bouwmeester, Jessica; Caragnano, Annalisa; Stefani, Fabrizio; Benzoni, Francesca.
A new scleractinian coral species, Pachyseris inattesa sp. n., is described from the Red Sea. Despite a superficial resemblance with some species in the agariciid genus Leptoseris with which it has been previously confused, P. inattesa sp. n. has micro-morphological characters typical of the genus Pachyseris. This genus, once part of the Agariciidae, is comprised of five extant species and is widely distributed throughout the tropical Indo-Pacific. It is currently incertae sedis as a result of recent molecular analysis and appears to be closely related to the Euphylliidae. A molecular phylogenetic reconstruction including P. inattesa sp. n., the genus type species P. rugosa, and P. speciosa, all present in the Red Sea, was performed using the mitochondrial...
Tipo: Text Palavras-chave: Pachyseris rugosa; Pachyseris speciosa; Leptoseris foliosa; Micro-morphology; COI-16S-rRNA intergenic spacer; Taxonomy.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00585/69701/67566.pdf
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Phylogenetic position and taxonomy of Cycloseris explanulata and C. wellsi (Scleractinia: Fungiidae): lost mushroom corals find their way home ArchiMer
Benzoni, Francesca; Arrigoni, Roberto; Stefani, Fabrizio; Reijnen, Bastian T.; Montano, Simone; Hoeksema, Bert W..
The scleractinian species Psammocora explanulata and Coscinaraea wellsi were originally classified in the family Siderastreidae, but in a recent morpho-molecular study it appeared that they are more closely related to each other and to the Fungiidae than to any siderastreid taxon. A subsequent morpho-molecular study of the Fungiidae provided new insights regarding the phylogenetic relationships within that family. In the present study existing molecular data sets of both families were analyzed jointly with those of new specimens and sequences of P. explanulata and C. wellsi. The results indicate that both species actually belong to the Cycloseris clade within the family Fungiidae. A reappraisal of their morphologic characters based on museum specimens and...
Tipo: Text Palavras-chave: COI; Coscinaraea wellsi; Psammocora explanulata; RDNA.
Ano: 2012 URL: https://archimer.ifremer.fr/doc/00145/25580/23718.pdf
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Scleractinian corals (Fungiidae, Agariciidae and Euphylliidae) of Pulau Layang-Layang, Spratly Islands, with a note on Pavona maldivensis (Gardiner, 1905) ArchiMer
Waheed, Zarinah; Benzoni, Francesca; Van Der Meij, Sancia E. T.; Terraneo, Tullia I.; Hoeksema, Bert W..
Layang-Layang is a small island part of an oceanic atoll in the Spratly Islands off Sabah, Malaysia. As the reef coral fauna in this part of the South China Sea is poorly known, a survey was carried out in 2013 to study the species composition of the scleractinian coral families Fungiidae, Agariciidae and Euphylliidae. A total of 56 species was recorded. The addition of three previously reported coral species brings the total to 59, consisting of 32 Fungiidae, 22 Agariciidae, and five Euphylliidae. Of these, 32 species are new records for Layang-Layang, which include five rarely reported species, i.e., the fungiids Lithophyllon ranjithi, Podabacia sinai, Sandalolitha boucheti, and the agariciids Leptoseris kalayaanensis and L. troglodyta. The coral fauna...
Tipo: Text Palavras-chave: Scleractinia; South China Sea; Malaysia; Atoll; Distribution ranges; New records; Species richness.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00585/69700/67567.pdf
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Seabirds supply nitrogen to reefbuilding corals on remote Pacific islets ArchiMer
Lorrain, Anne; Houlbreque, Fanny; Benzoni, Francesca; Barjon, Lucie; Tremblay-boyer, Laura; Menkes, Christophe; Gillikin, David P.; Payri, Claude; Jourdan, Herve; Boussarie, Germain; Verheyden, Anouk; Vidal, Eric.
Seabirds concentrate nutrients from large marine areas on their nesting islands playing an important ecological role in nutrient transfer between marine and terrestrial ecosystems. Here we investigate the role of guano on corals reefs across scales by analyzing the stable nitrogen isotopic (delta N-15) values of the scleractinian coral Pocillopora damicornis on fringing reefs around two Pacific remote islets with large seabird colonies. Marine stations closest to the seabird colonies had higher nitrate + nitrite concentrations compared to more distant stations. Coral and zooxanthellae delta N-15 values were also higher at these sites, suggesting that guano-derived nitrogen is assimilated into corals and contributes to their nitrogen requirements. The...
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Ano: 2017 URL: https://archimer.ifremer.fr/doc/00391/50239/50878.pdf
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Seascape genomics reveals candidate molecular targets of heat stress adaptation in three coral species ArchiMer
Selmoni, Oliver; Lecellier, Gaël; Magalon, Hélène; Vigliola, Laurent; Oury, Nicolas; Benzoni, Francesca; Peignon, Christophe; Joost, Stéphane; Berteaux‐lecellier, Véronique.
Anomalous heat waves are causing a major decline of hard corals around the world and threatening the persistence of coral reefs. There are, however, reefs that had been exposed to recurrent thermal stress over the years and whose corals appeared tolerant against heat. One of the mechanisms that could explain this phenomenon is local adaptation, but the underlying molecular mechanisms are poorly known. In this work, we applied a seascape genomics approach to study heat stress adaptation in three coral species of New Caledonia (southwestern Pacific) and to uncover molecular actors potentially involved. We used remote sensing data to characterize the environmental trends across the reef system, and sampled corals living at the most contrasted sites. These...
Tipo: Text
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00681/79297/81800.pdf
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Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae) ArchiMer
Arrigoni, Roberto; Richards, Zoe T.; Chen, Chaolun Allen; Baird, Andrew H.; Benzoni, Francesca.
Novel micromorphological characters in combination with molecular studies have led to an extensive revision of the taxonomy and systematics of scleractinian corals. In the present work, we investigate the macro- and micromorphology and the phylogenetic position of the genera Australomussa and Parascolymia, two monotypic genera ascribed to the family Lobophylliidae. The molecular phylogeny of both genera was addressed using three markers, the partial mitochondrial COI gene and the nuclear histone H3 and the ribosomal ITS region. Based on molecular data, Australomussa and Parascolymia belong to the Lobophylliidae and they cluster together with the genera Lobophyllia and Symphyllia within the same clade. While A. rowleyensis and P. vitiensis are closely...
Tipo: Text Palavras-chave: COI; Evolution; Histone H3; Lobophyllia; Pacific Ocean; RDNA; Symphyllia; Systematics; Taxonomic revision.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00298/40912/39970.pdf
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The Bouraké semi- enclosed lagoon (New Caledonia). A natural laboratory to study the life-long adaptation of a coral reef ecosystem to climate change-like conditions ArchiMer
Maggioni, Federica; Pujo-pay, Mireille; Aucan, Jérôme; Cerrano, Carlo; Calcinai, Barbara; Payri, Claude; Benzoni, Francesca; Letourneur, Yves; Rodolfo-metalpa, Riccardo.
According to current experimental evidence, coral reefs could disappear within the century if CO2 emissions remain unabated. However, recent discoveries of diverse and high cover reefs that already thrive under extreme conditions seem to contradict these projections. Volcanic CO2 vents, semi-enclosed lagoons and mangrove estuaries are unique study sites where one or more ecologically relevant parameters for life in the oceans are close or even worse than currently projected for the year 2100. These natural analogues of future conditions hold new hope for the future of coral reefs and provide unique natural laboratories to explore how reef species could keep pace with climate change. To achieve this, it is essential to characterize their environment as a...
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Ano: 2021 URL: https://archimer.ifremer.fr/doc/00693/80480/83620.pdf
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The name game: morpho-molecular species boundaries in the genus Psammocora (Cnidaria, Scleractinia) ArchiMer
Benzoni, Francesca; Stefani, Fabrizio; Pichon, Michel; Galli, Paolo.
The morphometric and molecular boundaries between twelve Psammocora (Cnidaria, Scleractinia) nominal species were addressed. The type specimens of Psammocora haimiana Milne Edwards & Haime, 1851, P. togianensis Umbgrove, 1940, P. folium Umbgrove, 1939, P. digitata Milne Edwards & Haime, 1851, Maeandroseris australiae Rousseau, 1854, P. samoensis Hoffmeister, 1925, P. superficialis Gardiner, 1898, P. profundacella Gardiner, 1898, P. nierstraszi Van der Horst, 1921, P. verrilli Vaughan, 1907, and P. albopicta Benzoni, 2006, were analysed together with specimens from museum collections, including those depicted in widely cited taxonomic descriptions, and material collected for this study in different parts of the Indo-Pacific. Morphometric analyses of...
Tipo: Text Palavras-chave: 5; 8S; Calice morphometry; Enclosed petaloid septa; ITS; Phylogeny; Psammocora haimiana; Psammocora vaughani; Scleractinian coral.
Ano: 2010 URL: https://archimer.ifremer.fr/doc/00138/24941/23034.pdf
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When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus ArchiMer
Arrigoni, Roberto; Benzoni, Francesca; Huang, Danwei; Fukami, Hironobu; Chen, Chaolun Allen; Berumen, Michael L.; Hoogenboom, Mia; Thomson, Damian P.; Hoeksema, Bert W.; Budd, Ann F.; Zayasu, Yuna; Terraneo, Tullia I.; Kitano, Yuko F.; Baird, Andrew H..
The scleractinian family Lobophylliidae is undergoing a major taxonomic revision thanks to the combination of molecular and morphological data. In this study, we investigate the evolutionary relationships and the macro- and micromorphology of six nominal coral species belonging to two of the nine molecular clades of the Lobophylliidae, clades A and B, and of Symphyllia wilsoni, a lobophylliid species analyzed from a molecular point of view for the first time. Sequence data from mitochondrial DNA (COI and the intergenic spacer between COI and l-rRNA), and nuclear DNA (histone H3 and ITS region) are used to generate robust molecular phylogenies and a median-joining haplotype network. Molecular results are strongly in agreement with detailed observations of...
Tipo: Text Palavras-chave: Coral; Evolution; Phylogeny; Systematics; Taxonomy.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00585/69699/67565.pdf
Registros recuperados: 12
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